Networks
The software listed below is freely available for academic users and for testing.
In case of commercial use, the users are kindly requested to contact us for agreeing on
a contract of utilization.
| Services | Description |
| METATOOL 5.1External link |
Program for computing the nullspace matrix, elementary modes and other structural properties of biochemical reaction networks. Octave and Matlab version. |
| Previous version 5.0External link METATOOL 4.xExternal link |
Program for computing the nullspace matrix, elementary modes and other structural properties of biochemical reaction networks. Stand-alone version. |
| BlockDiagExternal link | Program for computing and block-diagonalizing the nullspace matrix to the stoichiometriy matrix of a chemical reaction network. |
| External linkOptiModeExternal link | Program for detecting the elementary mode with the highest molar yield for a specified substrate - product pair from the output file of METATOOL. |
| SeparatorExternal link | Program for decomposing of large biochemical networks in to smaller ones. |
| Reducing the number of modesExternal link | A program to calculate elementary modes for the complete variety of external and internal metabolites and a program to calculate the approximated minimal number of modes. |
| NAD+ metabolismExternal link | Visualisation of all the elementary modes computed with Metatool 5.1 in the analysis of the NAD+ metabolic network. More details about this analysis can be found in de Figueiredo et al. 2011External link. |